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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_26255-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 9978.09 Da PI: 8.9542 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24 | 8.9e-08 | 17 | 62 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ E + + +a + +G W+++a+ mg ++++ +++ ++q TRIUR3_26255-P1 17 EWSKKENKMFEEALAYYGVSapnLWEKVASAMGGTKSADEVRRHFQ 62 7*****************99**9**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.934 | 10 | 65 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.0E-6 | 14 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.72E-12 | 16 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-4 | 17 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.0E-7 | 17 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.94E-5 | 17 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MSSGSSSRST SPSSDSEWSK KENKMFEEAL AYYGVSAPNL WEKVASAMGG TKSADEVRRH 60 FQILVDDVNS IEHGRIPFPK YKTQGFWTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-19 | 9 | 85 | 2 | 77 | RADIALIS |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361203 | 8e-81 | AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639473.1 | 9e-35 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 2e-24 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | M8AG28 | 6e-61 | M8AG28_TRIUA; Uncharacterized protein | ||||
STRING | MLOC_53626.2 | 2e-46 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 7e-24 | RAD-like 1 |